IL_1XNR_032

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNR_032 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0523

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1XNR|1|A|C|779
1XNR|1|A|A|780
1XNR|1|A|A|781
1XNR|1|A|A|782
1XNR|1|A|C|783
*
1XNR|1|A|G|799
1XNR|1|A|G|800
1XNR|1|A|U|801
1XNR|1|A|A|802
1XNR|1|A|G|803

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain K

16S Ribosomal protein S11