IL_1XNR_056

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNR_056 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.1594

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

1XNR|1|A|C|1407
1XNR|1|A|A|1408
1XNR|1|A|C|1409
*
1XNR|1|A|G|1491
1XNR|1|A|A|1492
1XNR|1|A|A|1493
1XNR|1|A|G|1494

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain L

16S Ribosomal protein S12

Chain W

mRNA

Chain X

Anticodon tRNA