IL_1XV0_028

3D structure

PDB id

1XV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGGAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XV0_028 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.2976

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

1XV0|28|A|U|3
1XV0|28|A|G|4
1XV0|28|A|G|5
1XV0|28|A|A|6
1XV0|28|A|G|7
*
1XV0|28|B|C|13
1XV0|28|B|G|14
1XV0|28|B|A|15
1XV0|28|B|A|16
1XV0|28|B|G|17

Current chains

Chain A

5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'

Chain B

5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3'

Nearby chains