Motif IL_95716.2 Version IL_95716.2 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_3IGI_002	3IGI	0.3099	0	Triple sheared	A	Group IIC intron	C	70	U	71	A	72	A	73	C	74	*	G	113	G	114	A	115	C	116	G	117	cWW	ntSH		tHS	cWW
2	IL_4YAZ_006	4YAZ	0.2509	0	Triple sheared	R	Cyclic di-GMP-I riboswitch	U	16	A	17	A	18	A	19	C	20	*	G	35	G	36	G	37	C	38	G	39	cWW	ntSH		tHS	cWW
3	IL_3MXH_002	3MXH	0.2695	0	Triple sheared	R	c-di-GMP riboswitch	C	22	A	23	A	24	A	25	C	26	*	G	41	G	42	A	43	C	44	G	45	cWW	ntSH		tHS	cWW
4	IL_3IWN_002	3IWN	0.2593	0	Triple sheared	A	C-di-GMP riboswitch	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35	cWW	ntSH		tHS	cWW
5	IL_8C3A_033	8C3A	0.2973	0	Triple sheared	1	LSU rRNA	U	830	G	831	A	832	A	833	G	834	*	U	851	G	852	G	853	A	854	G	855	cWW	tSH	tHS	tHS	cWW
6	IL_5TBW_030	5TBW	0.3297	0	Triple sheared	1	LSU rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW	tSH	tHS	tHS	cWW
7	IL_4WF9_024	4WF9	0.2729	0	Triple sheared	X	LSU rRNA	U	748	G	749	A	750	A	751	G	752	*	U	769	G	770	G	771	A	772	G	773	cWW		tHS	tHS	cWW
8	IL_8VTW_020	8VTW	0.2720	0	Triple sheared	1A	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH	tHS	tHS	cWW
9	IL_5J7L_263	5J7L	0.2851	0	Triple sheared	DA	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH	tHS	tHS	cWW
10	IL_4V9F_027	4V9F	0.2607	0	Triple sheared	0	LSU rRNA	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819	cWW	ntSH	tHS	tHS	cWW
11	IL_8C3A_073	8C3A	0.1504	0	Triple sheared	1	LSU rRNA	U	1641	G	1642	A	1643	A	1644	U	1645	*	A	1802	G	1803	G	1804	A	1805	A	1806	cWW	tSH	ntHS	tHS	cWW
12	IL_5TBW_067	5TBW	0.0000	0	Triple sheared	1	LSU rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW	tSH	tHS	tHS	cWW
13	IL_8VTW_074	8VTW	0.1900	0	Triple sheared	1A	LSU rRNA	C	1882	G	1883	A	1884	A	1885	C	1886	*	G	1856	G	1857	G	1858	A	1859	G	1860	cWW	tSH	tHS	tHS	cWW
14	IL_4V88_474	4V88	0.2855	0	Triple sheared	A6	SSU rRNA	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682	cWW		tHS	tHS	cWW
15	IL_8C3A_480	8C3A	0.2729	0	Triple sheared	CM	SSU rRNA	A	1706	G	1707	A	1708	A	1709	G	1710	*	C	1665	G	1666	G	1667	A	1668	U	1669	cWW	ntSW	ntHS	tHS	cWW
16	IL_2A64_005	2A64	0.2788	0	Triple sheared	A	ribonuclease P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	tSH	ntHS	tHS	cWW
17	IL_2A64_006	2A64	0.2673	0	Triple sheared	A	ribonuclease P RNA	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351	cWW		tHS	tHS	cWW
18	IL_7A0S_070	7A0S	0.3494	0	Triple sheared	X	LSU rRNA	C	1865	G	1866	A	1867	A	1868	A	1869	*	U	1848	G	1849	G	1850	A	1851	G	1852	cWW	ntSH		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAG*UGGAG	5
CAAAC*GGACG	2
UGAAU*AGGAA	2
CGAAG*CGGAG	2
CUAAC*GGACG	1
UAAAC*GGGCG	1
UGAAG*UGGAA	1
CGAAC*GGGAG	1
AGAAU*AGGAU	1
AGAAG*CGGAU	1
CGAAA*UGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	14
AAA*GAC	2
UAA*GAC	1
AAA*GGC	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	Updated, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared (18)
Basepair signature: cWW-cWW-tHS-tHS-tSH-cWW
Heat map statistics: Min 0.07 | Avg 0.29 | Max 0.57

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Coloring options: Nucleotide numbers

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