IL_1Y69_007

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGAACUGA*UCUCAGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_007 not in the Motif Atlas

Geometric match to IL_3DIL_003

Geometric discrepancy: 0.3404

The information below is about IL_3DIL_003

Detailed Annotation

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_34470.3

Basepair signature

cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

Number of instances in this motif group

2

Unit IDs

1Y69|1|0|G|165
1Y69|1|0|G|166
1Y69|1|0|A|167
1Y69|1|0|A|168
1Y69|1|0|C|169
1Y69|1|0|U|170
1Y69|1|0|G|171
1Y69|1|0|A|172
*
1Y69|1|0|U|177
1Y69|1|0|C|178
1Y69|1|0|U|179
1Y69|1|0|C|180
1Y69|1|0|A|181
1Y69|1|0|G|182
1Y69|1|0|U|183
1Y69|1|0|A|184
1Y69|1|0|C|185

Current chains

Chain 0

23S ribosomal RNA

Nearby chains