IL_1Y69_008

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_008 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1961

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1Y69|1|0|G|215
1Y69|1|0|U|216
1Y69|1|0|U|217
1Y69|1|0|A|218
1Y69|1|0|G|219
1Y69|1|0|U|220
1Y69|1|0|A|221
1Y69|1|0|G|222
*
1Y69|1|0|C|230
1Y69|1|0|G|231
1Y69|1|0|A|232
1Y69|1|0|A|233
1Y69|1|0|C|234
1Y69|1|0|C|235
1Y69|1|0|C|236

Current chains

Chain 0

23S ribosomal RNA

Nearby chains