IL_1Y69_018

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_018 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1329

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1Y69|1|0|U|716
1Y69|1|0|G|717
1Y69|1|0|A|718
1Y69|1|0|A|719
1Y69|1|0|A|720
1Y69|1|0|C|721
*
1Y69|1|0|G|736
1Y69|1|0|C|737
1Y69|1|0|G|738
1Y69|1|0|G|739
1Y69|1|0|A|740
1Y69|1|0|G|741

Current chains

Chain 0

23S ribosomal RNA

Nearby chains