IL_1Y69_030

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAUCA*UAUG

Length

9 nucleotides

Bulged bases

1Y69|1|0|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_030 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3231

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

1Y69|1|0|C|1003
1Y69|1|0|A|1004
1Y69|1|0|U|1005
1Y69|1|0|C|1006
1Y69|1|0|A|1007
*
1Y69|1|0|U|1170
1Y69|1|0|A|1171
1Y69|1|0|U|1172
1Y69|1|0|G|1173

Current chains

Chain 0

23S ribosomal RNA

Nearby chains