IL_1Y69_052

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_052 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1454

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

1Y69|1|0|C|1364
1Y69|1|0|U|1365
1Y69|1|0|A|1366
1Y69|1|0|A|1367
1Y69|1|0|G|1368
*
1Y69|1|0|C|1389
1Y69|1|0|G|1390
1Y69|1|0|A|1391
1Y69|1|0|U|1392
1Y69|1|0|G|1393

Current chains

Chain 0

23S ribosomal RNA

Nearby chains