IL_1Y69_071

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

1Y69|1|0|C|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_071 not in the Motif Atlas

Homologous match to IL_7A0S_066

Geometric discrepancy: 0.2098

The information below is about IL_7A0S_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

1Y69|1|0|C|1829
1Y69|1|0|C|1830
1Y69|1|0|G|1831
1Y69|1|0|G|1832
*
1Y69|1|0|C|1885
1Y69|1|0|G|1886

Current chains

Chain 0

23S ribosomal RNA

Nearby chains