IL_1Y69_090

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GCGUAG*CC

Length

8 nucleotides

Bulged bases

1Y69|1|0|A|2097

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_090 not in the Motif Atlas

Geometric match to IL_5TBW_136

Geometric discrepancy: 0.3449

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

1Y69|1|0|G|2093
1Y69|1|0|C|2094
1Y69|1|0|G|2095
1Y69|1|0|U|2096
1Y69|1|0|A|2097
1Y69|1|0|G|2103
*
1Y69|1|0|C|2161
1Y69|1|0|C|2162

Current chains

Chain 0

23S ribosomal RNA

Nearby chains