IL_1Y69_094

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

1Y69|1|0|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_094 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2558

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1Y69|1|0|C|2276
1Y69|1|0|A|2277
1Y69|1|0|A|2278
*
1Y69|1|0|U|2296
1Y69|1|0|G|2297
1Y69|1|0|U|2298
1Y69|1|0|A|2299
1Y69|1|0|G|2300

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA