Motif IL_38958.7 Version IL_38958.7 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-5	1-6	2-5	3-4
1	IL_1L9A_004	1L9A	0.5950	0	Isolated tHS basepair with bulges	B	signal recognition particle RNA S domain	U	132	A	133	U	134	*	A	163	G	164	G	165	ncWWa	cWW	tHS	ncWW
2	IL_7A0S_080	7A0S	0.4737	2	Isolated tHS basepair with bulges	X	LSU rRNA	C	2276	A	2277	A	2278	*	U	2296	G	2297	G	2300		cWW	ntHS	cWW
3	IL_7RQB_082	7RQB	0.2603	1	Isolated tHS basepair with bulges	1A	LSU rRNA	C	2081	A	2082	G	2083	*	C	2236	G	2237	G	2239		cWW	tHS	cWW
4	IL_4V9F_076	4V9F	0.3030	1	Isolated tHS basepair with bulges	0	LSU rRNA	C	2122	A	2123	G	2124	*	C	2269	G	2270	G	2272		cWW	tHS	cWW
5	IL_7RQB_012	7RQB	0.2655	1	Isolated tHS basepair with bulges	1A	LSU rRNA	C	288	A	289	G	290	*	U	350	G	351	G	353		cWW	tHS	cWW
6	IL_5J7L_325	5J7L	0.1316	1	Isolated tHS basepair with bulges	DA	LSU rRNA	U	2081	A	2082	G	2083	*	U	2236	G	2237	G	2239		cWW	tHS	cWW
7	IL_8C3A_100	8C3A	0.0000	1	Isolated tHS basepair with bulges (H)	1	LSU rRNA	U	2401	A	2402	G	2403	*	U	2576	G	2577	G	2579		cWW	tHS	cWW
8	IL_5TBW_095	5TBW	0.0680	1	Isolated tHS basepair with bulges	1	LSU rRNA	U	2423	A	2424	G	2425	*	U	2604	G	2605	G	2607		cWW	tHS	cWW
9	IL_4WF9_082	4WF9	0.1779	1	Isolated tHS basepair with bulges	X	LSU rRNA	U	2108	A	2109	G	2110	*	C	2263	G	2264	G	2266		cWW	tHS	cWW
10	IL_7A0S_077	7A0S	0.1819	1	Isolated tHS basepair with bulges	X	LSU rRNA	U	2064	A	2065	G	2066	*	C	2215	G	2216	G	2218		cWW	ntHS	cWW
11	IL_5TBW_099	5TBW	0.3718	2	Isolated tHS basepair with bulges	1	LSU rRNA	C	2666	A	2667	U	2668	*	A	2686	G	2687	G	2690		cWW	tHS	cWW
12	IL_8C3A_108	8C3A	0.4076	2	Isolated tHS basepair with bulges (H)	1	LSU rRNA	C	2638	A	2639	U	2640	*	A	2658	G	2659	G	2662		cWW	tHS	cWW
13	IL_4WF9_086	4WF9	0.4108	2	Isolated tHS basepair with bulges	X	LSU rRNA	C	2324	A	2325	G	2326	*	C	2344	A	2345	G	2348		cWW	tHS	cWW
14	IL_4V9F_080	4V9F	0.4866	2	Isolated tHS basepair with bulges	0	LSU rRNA	C	2331	A	2332	G	2333	*	C	2351	G	2352	G	2355		cWW	tHS	cWW
15	IL_7RQB_088	7RQB	0.4731	2	Isolated tHS basepair with bulges	1A	LSU rRNA	C	2297	A	2298	G	2299	*	C	2317	G	2318	G	2321		cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAG*UGGG	3
CAG*CGGG	2
UAG*CGGG	2
CAU*AGUAG	2
UAU*AGG	1
CAA*UGUAG	1
CAG*UGGG	1
CAG*CAUAG	1
CAG*CGAAG	1
CAG*CGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*GG	8
A*GUA	3
A*G	1
A*AUA	1
A*GAA	1
A*GGA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated tHS basepair with bulges (13)
Isolated tHS basepair with bulges (H) (2)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.33 | Max 0.68

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Coloring options: Nucleotide numbers

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