IL_1Y69_095

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_095 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.171

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

1Y69|1|0|C|2329
1Y69|1|0|G|2330
1Y69|1|0|A|2331
1Y69|1|0|G|2332
*
1Y69|1|0|C|2343
1Y69|1|0|G|2344
1Y69|1|0|A|2345
1Y69|1|0|G|2346

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L27