IL_1Y69_097

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUAC*GGC

Length

7 nucleotides

Bulged bases

1Y69|1|0|A|2381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_097 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.2279

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

1Y69|1|0|G|2379
1Y69|1|0|U|2380
1Y69|1|0|A|2381
1Y69|1|0|C|2382
*
1Y69|1|0|G|2393
1Y69|1|0|G|2394
1Y69|1|0|C|2395

Current chains

Chain 0

23S ribosomal RNA

Nearby chains