IL_1Y69_107

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

1Y69|1|0|G|2757, 1Y69|1|0|U|2759, 1Y69|1|0|G|2760, 1Y69|1|0|A|2761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_107 not in the Motif Atlas

Homologous match to IL_7A0S_093

Geometric discrepancy: 0.2492

The information below is about IL_7A0S_093

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1Y69|1|0|U|2615
1Y69|1|0|U|2616
1Y69|1|0|G|2617
1Y69|1|0|A|2618
1Y69|1|0|G|2619
*
1Y69|1|0|C|2754
1Y69|1|0|A|2755
1Y69|1|0|A|2756
1Y69|1|0|G|2757
1Y69|1|0|A|2758
1Y69|1|0|U|2759
1Y69|1|0|G|2760
1Y69|1|0|A|2761
1Y69|1|0|G|2762

Current chains

Chain 0

23S ribosomal RNA

Nearby chains