IL_1Y69_109

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CCGCU*AUG

Length

8 nucleotides

Bulged bases

1Y69|1|0|U|2706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_109 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.1509

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

1Y69|1|0|C|2659
1Y69|1|0|C|2660
1Y69|1|0|G|2661
1Y69|1|0|C|2662
1Y69|1|0|U|2663
*
1Y69|1|0|A|2705
1Y69|1|0|U|2706
1Y69|1|0|G|2707

Current chains

Chain 0

23S ribosomal RNA

Nearby chains