IL_1Y69_113

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

1Y69|1|0|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_113 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1714

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1Y69|1|0|G|2717
1Y69|1|0|A|2718
1Y69|1|0|U|2719
1Y69|1|0|A|2720
1Y69|1|0|A|2721
1Y69|1|0|C|2722
*
1Y69|1|0|G|2742
1Y69|1|0|G|2743
1Y69|1|0|A|2744
1Y69|1|0|A|2745
1Y69|1|0|G|2746
1Y69|1|0|C|2747

Current chains

Chain 0

23S ribosomal RNA

Nearby chains