IL_1Y69_129

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

1Y69|1|0|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_129 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2379

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1Y69|1|0|G|1008
1Y69|1|0|C|1009
1Y69|1|0|U|1010
1Y69|1|0|A|1011
1Y69|1|0|A|1012
1Y69|1|0|G|1013
*
1Y69|1|0|C|1164
1Y69|1|0|G|1165
1Y69|1|0|A|1166
1Y69|1|0|A|1167
1Y69|1|0|G|1168
1Y69|1|0|C|1169

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA