IL_1Y69_143

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

1Y69|1|0|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_143 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.3247

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

1Y69|1|0|C|1210
1Y69|1|0|G|1211
1Y69|1|0|U|1212
*
1Y69|1|0|A|1260
1Y69|1|0|G|1261
1Y69|1|0|U|1262
1Y69|1|0|G|1263

Current chains

Chain 0

23S ribosomal RNA

Nearby chains