IL_1YHQ_057

3D structure

PDB id

1YHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

1YHQ|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YHQ_057 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0465

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

1YHQ|1|0|U|1587
1YHQ|1|0|G|1588
1YHQ|1|0|G|1589
1YHQ|1|0|A|1590
1YHQ|1|0|A|1591
1YHQ|1|0|G|1592
*
1YHQ|1|0|C|1602
1YHQ|1|0|A|1603
1YHQ|1|0|G|1604
1YHQ|1|0|G|1605
1YHQ|1|0|A|1606
1YHQ|1|0|A|1607
1YHQ|1|0|G|1608

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19E

Chain Z

50S ribosomal protein L37Ae