IL_1YI2_012

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YI2_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0376

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1YI2|1|0|C|290
1YI2|1|0|C|291
1YI2|1|0|G|292
1YI2|1|0|A|293
1YI2|1|0|C|294
1YI2|1|0|C|295
1YI2|1|0|G|296
*
1YI2|1|0|C|355
1YI2|1|0|C|356
1YI2|1|0|A|357
1YI2|1|0|G|358
1YI2|1|0|U|359
1YI2|1|0|A|360
1YI2|1|0|C|361
1YI2|1|0|G|362

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains