IL_1YI2_070

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1YI2|1|0|G|1979, 1YI2|1|0|U|1985, 1YI2|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YI2_070 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0278

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1YI2|1|0|C|1975
1YI2|1|0|G|1976
1YI2|1|0|U|1977
1YI2|1|0|A|1978
1YI2|1|0|G|1979
1YI2|1|0|U|1980
1YI2|1|0|A|1981
1YI2|1|0|C|1982
1YI2|1|0|C|1983
1YI2|1|0|U|1984
1YI2|1|0|U|1985
1YI2|1|0|G|1986
*
1YI2|1|0|C|2002
1YI2|1|0|U|2003
1YI2|1|0|U|2004
1YI2|1|0|G|2005

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains