IL_1YI2_088

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

1YI2|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YI2_088 not in the Motif Atlas

Geometric match to IL_4WF9_099

Geometric discrepancy: 0.2603

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1YI2|1|0|C|2672
1YI2|1|0|U|2673
1YI2|1|0|G|2674
1YI2|1|0|A|2675
1YI2|1|0|C|2676
*
1YI2|1|0|G|2809
1YI2|1|0|G|2810
1YI2|1|0|A|2811
1YI2|1|0|A|2812
1YI2|1|0|A|2813
1YI2|1|0|A|2814
1YI2|1|0|G|2815
1YI2|1|0|A|2816
1YI2|1|0|G|2817

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P