IL_1YIJ_070

3D structure

PDB id

1YIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Telithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1YIJ|1|0|G|1979, 1YIJ|1|0|U|1985, 1YIJ|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIJ_070 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0299

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1YIJ|1|0|C|1975
1YIJ|1|0|G|1976
1YIJ|1|0|U|1977
1YIJ|1|0|A|1978
1YIJ|1|0|G|1979
1YIJ|1|0|U|1980
1YIJ|1|0|A|1981
1YIJ|1|0|C|1982
1YIJ|1|0|C|1983
1YIJ|1|0|U|1984
1YIJ|1|0|U|1985
1YIJ|1|0|G|1986
*
1YIJ|1|0|C|2002
1YIJ|1|0|U|2003
1YIJ|1|0|U|2004
1YIJ|1|0|G|2005

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains