IL_1YIT_009

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1YIT|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_009 not in the Motif Atlas

Homologous match to IL_4V9F_009

Geometric discrepancy: 0.0498

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1YIT|1|0|A|248
1YIT|1|0|G|249
*
1YIT|1|0|C|260
1YIT|1|0|A|261
1YIT|1|0|A|262
1YIT|1|0|U|263
1YIT|1|0|G|264
1YIT|1|0|U|265

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S RIBOSOMAL PROTEIN L7AE

Chain M

50S RIBOSOMAL PROTEIN L15E