IL_1YIT_012

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0422

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1YIT|1|0|C|290
1YIT|1|0|C|291
1YIT|1|0|G|292
1YIT|1|0|A|293
1YIT|1|0|C|294
1YIT|1|0|C|295
1YIT|1|0|G|296
*
1YIT|1|0|C|355
1YIT|1|0|C|356
1YIT|1|0|A|357
1YIT|1|0|G|358
1YIT|1|0|U|359
1YIT|1|0|A|360
1YIT|1|0|C|361
1YIT|1|0|G|362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains