IL_1YIT_019

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_019 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0499

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1YIT|1|0|U|567
1YIT|1|0|G|568
1YIT|1|0|A|569
1YIT|1|0|C|570
1YIT|1|0|C|571
1YIT|1|0|G|572
*
1YIT|1|0|C|585
1YIT|1|0|C|586
1YIT|1|0|A|587
1YIT|1|0|G|588
1YIT|1|0|U|589
1YIT|1|0|A|590
1YIT|1|0|A|591

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain W

50S RIBOSOMAL PROTEIN L30P