IL_1YIT_050

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCACU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_050 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.0583

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

1YIT|1|0|G|1425
1YIT|1|0|C|1426
1YIT|1|0|A|1427
1YIT|1|0|C|1428
1YIT|1|0|U|1429
*
1YIT|1|0|A|1437
1YIT|1|0|G|1438
1YIT|1|0|C|1439

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L39E

Chain P

50S RIBOSOMAL PROTEIN L19E

Chain R

50S RIBOSOMAL PROTEIN L22P