IL_1YIT_056

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

1YIT|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_056 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0483

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1YIT|1|0|C|1578
1YIT|1|0|C|1579
1YIT|1|0|A|1580
1YIT|1|0|A|1581
1YIT|1|0|C|1582
1YIT|1|0|U|1583
*
1YIT|1|0|A|1612
1YIT|1|0|C|1613
1YIT|1|0|G|1614
1YIT|1|0|A|1615
1YIT|1|0|A|1616
1YIT|1|0|C|1617
1YIT|1|0|G|1618

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains