IL_1YIT_065

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

1YIT|1|0|C|1894

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_065 not in the Motif Atlas

Homologous match to IL_4V9F_066

Geometric discrepancy: 0.0457

The information below is about IL_4V9F_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

1YIT|1|0|C|1893
1YIT|1|0|C|1894
1YIT|1|0|A|1895
1YIT|1|0|G|1896
*
1YIT|1|0|C|1943
1YIT|1|0|G|1944

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P