Motif IL_55206.4 Version IL_55206.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_066 | 7A0S | 0.1864 | 1 | Minor groove platform, major groove intercalation | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | cWW | |
| 2 | IL_9E6Q_069 | 9E6Q | 0.1395 | 1 | Minor groove platform, major groove intercalation (H) | 1 | LSU rRNA | C | 1973 | A | 1975 | OMC | 1976 | * | G | 2023 | G | 2024 | cWW | cWW | |
| 3 | IL_4V9F_066 | 4V9F | 0.1321 | 1 | Minor groove platform, major groove intercalation | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
| 4 | IL_9DFE_071 | 9DFE | 0.0938 | 1 | Minor groove platform, major groove intercalation | 1A | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | ntHS | cWW |
| 5 | IL_9AXU_080 | 9AXU | 0.0563 | 1 | Minor groove platform, major groove intercalation (H) | 2 | LSU rRNA | C | 2284 | A | 2286 | G | 2287 | * | C | 2333 | G | 2334 | cWW | cWW | |
| 6 | IL_9SUM_078 | 9SUM | 0.0000 | 1 | A | LSU rRNA | C | 2111 | A | 2113 | G | 2114 | * | C | 2160 | G | 2161 | cWW | cWW | ||
| 7 | IL_9PN5_082 | 9PN5 | 0.0344 | 1 | A1 | LSU rRNA | C | 2196 | A | 2198 | G | 2199 | * | C | 2245 | G | 2246 | cWW | cWW | ||
| 8 | IL_9H3G_093 | 9H3G | 0.0651 | 1 | A | LSU rRNA | C | 2194 | A | 2196 | G | 2197 | * | C | 2243 | G | 2244 | cWW | cWW | ||
| 9 | IL_8GLP_116 | 8GLP | 0.0782 | 1 | L5 | LSU rRNA | C | 3700 | A | 3702 | G | 3703 | * | C | 3749 | G | 3750 | cWW | cWW | ||
| 10 | IL_8OI5_086 | 8OI5 | 0.0874 | 1 | 1 | LSU rRNA | C | 2174 | A | 2176 | G | 2177 | * | C | 2223 | G | 2224 | cWW | cWW | ||
| 11 | IL_8B0X_133 | 8B0X | 0.0954 | 1 | Minor groove platform, major groove intercalation (H) | a | LSU rRNA | C | 1839 | G | 1841 | G | 1842 | * | C | 1906 | G | 1907 | cWW | ntHS | cWW |
| 12 | IL_1U9S_005 | 1U9S | 0.1731 | 1 | Minor groove platform, major groove intercalation | A | RNase P class A | C | 136 | G | 138 | C | 139 | * | G | 161 | G | 162 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAG*CG | 5 |
| CCGG*CG | 3 |
| CCA(OMC)*GG | 1 |
| C(OMC)AG*CG | 1 |
| CAG*CG | 1 |
| CAGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CA* | 6 |
| CG* | 3 |
| (OMC)A* | 2 |
| AG* | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Minor groove platform, major groove intercalation (4)
- Minor groove platform, major groove intercalation (H) (3)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.03 | Avg 0.13 | Max 0.28
Coloring options: