IL_1YIT_096

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGUGCG*UUAAG

Length

11 nucleotides

Bulged bases

1YIT|1|0|A|2890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_096 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.0567

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

1YIT|1|0|U|2864
1YIT|1|0|G|2865
1YIT|1|0|U|2866
1YIT|1|0|G|2867
1YIT|1|0|C|2868
1YIT|1|0|G|2869
*
1YIT|1|0|U|2888
1YIT|1|0|U|2889
1YIT|1|0|A|2890
1YIT|1|0|A|2891
1YIT|1|0|G|2892

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain U

50S RIBOSOMAL PROTEIN L24E