IL_1YIT_099
3D structure
- PDB id
- 1YIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUUGCCU*AUAAGC
- Length
- 14 nucleotides
- Bulged bases
- 1YIT|1|9|U|23, 1YIT|1|9|U|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YIT_099 not in the Motif Atlas
- Homologous match to IL_4V9F_102
- Geometric discrepancy: 0.5691
- The information below is about IL_4V9F_102
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_67623.1
- Basepair signature
- cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1YIT|1|9|G|21
1YIT|1|9|G|22
1YIT|1|9|U|23
1YIT|1|9|U|24
1YIT|1|9|G|25
1YIT|1|9|C|26
1YIT|1|9|C|27
1YIT|1|9|U|28
*
1YIT|1|9|A|54
1YIT|1|9|U|55
1YIT|1|9|A|56
1YIT|1|9|A|57
1YIT|1|9|G|58
1YIT|1|9|C|59
Current chains
- Chain 9
- 5S RIBOSOMAL RNA
Nearby chains
- Chain D
- 50S RIBOSOMAL PROTEIN L5P
- Chain N
- 50S RIBOSOMAL PROTEIN L18P
Coloring options: