IL_1YJ9_012

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0563

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1YJ9|1|0|C|290
1YJ9|1|0|C|291
1YJ9|1|0|G|292
1YJ9|1|0|A|293
1YJ9|1|0|C|294
1YJ9|1|0|C|295
1YJ9|1|0|G|296
*
1YJ9|1|0|C|355
1YJ9|1|0|C|356
1YJ9|1|0|A|357
1YJ9|1|0|G|358
1YJ9|1|0|U|359
1YJ9|1|0|A|360
1YJ9|1|0|C|361
1YJ9|1|0|G|362

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains