IL_1YJ9_019

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_019 not in the Motif Atlas

Homologous match to IL_4V9F_019

Geometric discrepancy: 0.0459

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1YJ9|1|0|U|567
1YJ9|1|0|G|568
1YJ9|1|0|A|569
1YJ9|1|0|C|570
1YJ9|1|0|C|571
1YJ9|1|0|G|572
*
1YJ9|1|0|C|585
1YJ9|1|0|C|586
1YJ9|1|0|A|587
1YJ9|1|0|G|588
1YJ9|1|0|U|589
1YJ9|1|0|A|590
1YJ9|1|0|A|591

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30P