IL_1YJ9_040

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

1YJ9|1|0|C|1245, 1YJ9|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_040 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1507

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1YJ9|1|0|U|1115
1YJ9|1|0|U|1116
1YJ9|1|0|A|1117
1YJ9|1|0|A|1118
1YJ9|1|0|G|1119
1YJ9|1|0|U|1120
1YJ9|1|0|G|1121
*
1YJ9|1|0|C|1243
1YJ9|1|0|U|1244
1YJ9|1|0|C|1245
1YJ9|1|0|A|1246
1YJ9|1|0|A|1247
1YJ9|1|0|A|1248

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P