IL_1YJ9_050
3D structure
- PDB id
- 1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YJ9_050 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.0454
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.1
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 32
Unit IDs
1YJ9|1|0|G|1416
1YJ9|1|0|G|1417
1YJ9|1|0|U|1418
1YJ9|1|0|U|1419
*
1YJ9|1|0|A|1678
1YJ9|1|0|C|1679
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain P
- 50S ribosomal protein L19E
- Chain S
- 50S ribosomal protein L23P
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