IL_1YJ9_071

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1YJ9|1|0|G|1979, 1YJ9|1|0|U|1985, 1YJ9|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0454

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1YJ9|1|0|C|1975
1YJ9|1|0|G|1976
1YJ9|1|0|U|1977
1YJ9|1|0|A|1978
1YJ9|1|0|G|1979
1YJ9|1|0|U|1980
1YJ9|1|0|A|1981
1YJ9|1|0|C|1982
1YJ9|1|0|C|1983
1YJ9|1|0|U|1984
1YJ9|1|0|U|1985
1YJ9|1|0|G|1986
*
1YJ9|1|0|C|2002
1YJ9|1|0|U|2003
1YJ9|1|0|U|2004
1YJ9|1|0|G|2005

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains