IL_1YJ9_104
3D structure
- PDB id
- 1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAGUAC*GGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YJ9_104 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2474
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
1YJ9|1|9|G|74
1YJ9|1|9|G|75
1YJ9|1|9|G|76
1YJ9|1|9|A|77
1YJ9|1|9|G|78
1YJ9|1|9|U|79
1YJ9|1|9|A|80
1YJ9|1|9|C|81
*
1YJ9|1|9|G|101
1YJ9|1|9|G|102
1YJ9|1|9|A|103
1YJ9|1|9|A|104
1YJ9|1|9|A|105
1YJ9|1|9|U|106
1YJ9|1|9|C|107
Current chains
- Chain 9
- 5S Ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain W
- 50S ribosomal protein L30P
Coloring options: