#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-134-125-66-117-108-9
1 IL_7A0S_0457A0S0.258708x7 Sarcin-Ricin; G-bulgeX LSU rRNAA1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcwWtSHcSHtWHtHScWW
2 IL_8VTW_0488VTW0.256908x7 Sarcin-Ricin; G-bulge (H)1A LSU rRNAA1262U1263G1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcwWtSHtHHcSHtWHtHScWW
3 IL_4WF9_0484WF90.269208x7 Sarcin-Ricin; G-bulgeX LSU rRNAG1300U1301G1302A1303G1304U1305A1306G1307*U2038G2039A2040A2041A2042U2043C2044cWWcwWtSHtHHncSWtHScWW
4 IL_5J7L_2895J7L0.253808x7 Sarcin-Ricin; G-bulgeDA LSU rRNAA1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcwWtSHtHHcSHtWHtHScWW
5 IL_8C3A_1258C3A0.265308x7 Sarcin-Ricin; G-bulge1 LSU rRNAC2990U2991U2992A2993G2994U2995A2996C2997*G3002G3003A3004A3005C3006C3007G3008cWWtSHtHHcSHtWHtHScWW
6 IL_5TBW_1165TBW0.233108x7 Sarcin-Ricin; G-bulge1 LSU rRNAC3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWtSHtHHcSHtWHtHScWW
7 IL_7A0S_0077A0S0.191208x7 Sarcin-Ricin; G-bulgeX LSU rRNAG215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWntSHtHHcSHtWHtHScWW
8 IL_4WF9_0094WF90.202608x7 Sarcin-Ricin; G-bulgeX LSU rRNAC241U242U243A244G245U246A247G248*C256G257A258A259A260C261G262cWWtSHtHHcSHtWHtHScWW
9 IL_1JBR_0011JBR0.151408x7 Sarcin-Ricin; G-bulgeC+FRNA (18-mer) + RNA (13-mer)C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWtSHtHHcSHtWHtHScWW
10 IL_8VTW_0068VTW0.000008x7 Sarcin-Ricin; G-bulge (H)1A LSU rRNAC201U202C203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcwWtSHtHHcSHtWHtHScWW
11 IL_5J7L_2505J7L0.056908x7 Sarcin-Ricin; G-bulgeDA LSU rRNAC201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcwWtSHtHHcSHtWHtHScWW
12 IL_4V9F_0064V9F0.072108x7 Sarcin-Ricin; G-bulge0 LSU rRNAC171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcwWtSHtHHcSHtWHtHScWW
13 IL_7A0S_0067A0S0.094708x7 Sarcin-Ricin; G-bulgeX LSU rRNAC178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcwWntSHntHHncSHtWHtHScWW
14 IL_5TBW_3775TBW0.223018x7 Sarcin-Ricin; G-bulgeAS 5S rRNAA72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWwtSHtHHcSHtWHtHScWW
15 IL_8C3A_1488C3A0.238018x7 Sarcin-Ricin; G-bulge3 5S rRNAA72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWwtSHtHHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUGAGUAA*UGAAAUU2
CUCAGUAC*GGAACUG2
ACCGAGUAG*CGAAACU2
GUGAGUAG*UGAAAUC1
AUAAGUAA*UGAAAUU1
CUUAGUAC*GGAACCG1
CUUAGUAC*GGAACAG1
GUUAGUAG*CGAACCC1
CUUAGUAG*CGAAACG1
CUCAGUAC*GGAACCG1
CUAAGUAC*GGAACUG1
CUCAGUAU*AGAACUG1
Non-Watson-Crick part of the motif
SequenceCounts
UGAGUA*GAAAU3
UCAGUA*GAACU3
UUAGUA*GAACC2
CCGAGUA*GAAAC2
UAAGUA*GAAAU1
UUAGUA*GAACA1
UUAGUA*GAAAC1
UCAGUA*GAACC1
UAAGUA*GAACU1

Release history

Release3.873.883.89
Date2024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 8x7 Sarcin-Ricin; G-bulge (13)
  • 8x7 Sarcin-Ricin; G-bulge (H) (2)
  • Basepair signature
    cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.22 | Max 0.35
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