IL_1YJN_016

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GU*AAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJN_016 not in the Motif Atlas

Geometric match to IL_4V9F_016

Geometric discrepancy: 0.0897

The information below is about IL_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22002.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1YJN|1|0|G|554
1YJN|1|0|U|555
*
1YJN|1|0|A|602
1YJN|1|0|A|603
1YJN|1|0|G|604
1YJN|1|0|C|605

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L32E