IL_1YJN_065

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

1YJN|1|0|C|1894

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJN_065 not in the Motif Atlas

Homologous match to IL_4V9F_066

Geometric discrepancy: 0.0705

The information below is about IL_4V9F_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

1YJN|1|0|C|1893
1YJN|1|0|C|1894
1YJN|1|0|A|1895
1YJN|1|0|G|1896
*
1YJN|1|0|C|1943
1YJN|1|0|G|1944

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P