IL_1YJN_094

3D structure

PDB id

1YJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

1YJN|1|0|A|2902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJN_094 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.0723

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

1YJN|1|0|G|2855
1YJN|1|0|A|2856
1YJN|1|0|C|2857
*
1YJN|1|0|G|2900
1YJN|1|0|C|2901
1YJN|1|0|A|2902
1YJN|1|0|C|2903

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain X

50S ribosomal protein L31e