IL_1YJN_110
3D structure
- PDB id
- 1YJN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUAC*GGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YJN_110 not in the Motif Atlas
- Homologous match to IL_4V9F_106
- Geometric discrepancy: 0.0443
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
1YJN|1|9|G|75
1YJN|1|9|G|76
1YJN|1|9|A|77
1YJN|1|9|G|78
1YJN|1|9|U|79
1YJN|1|9|A|80
1YJN|1|9|C|81
*
1YJN|1|9|G|101
1YJN|1|9|G|102
1YJN|1|9|A|103
1YJN|1|9|A|104
1YJN|1|9|A|105
1YJN|1|9|U|106
Current chains
- Chain 9
- 5S Ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain W
- 50S ribosomal protein L30P
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