IL_1YJW_108

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAUUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJW_108 not in the Motif Atlas

Homologous match to IL_4V9F_111

Geometric discrepancy: 0.0403

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

1YJW|1|0|G|1744
1YJW|1|0|G|1745
1YJW|1|0|A|1746
1YJW|1|0|A|1747
1YJW|1|0|U|1748
1YJW|1|0|U|1749
1YJW|1|0|C|1750
1YJW|1|0|G|1751
1YJW|1|0|G|1752
*
1YJW|1|0|C|2031
1YJW|1|0|U|2032
1YJW|1|0|G|2033
1YJW|1|0|U|2034
1YJW|1|0|C|2035

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain K

50S RIBOSOMAL PROTEIN L14P