IL_1YLS_006
3D structure
- PDB id
- 1YLS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGC*GG(CSL)CGUGC
- Length
- 12 nucleotides
- Bulged bases
- 1YLS|1|D|G|208
- QA status
- Modified nucleotides: CSL
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1YLS_006 not in the Motif Atlas
- Geometric match to IL_1YLS_001
- Geometric discrepancy: 0.0684
- The information below is about IL_1YLS_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09570.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L-R
- Number of instances in this motif group
- 1
Unit IDs
1YLS|1|C|G|102
1YLS|1|C|A|103
1YLS|1|C|G|104
1YLS|1|C|C|105
*
1YLS|1|D|G|207
1YLS|1|D|G|208
1YLS|1|D|CSL|209
1YLS|1|D|C|210
1YLS|1|D|G|211
1YLS|1|D|U|212
1YLS|1|D|G|213
1YLS|1|D|C|214
Current chains
- Chain C
- RNA Diels-Alder ribozyme
- Chain D
- RNA Diels-Alder ribozyme
Nearby chains
- Chain B
- RNA Diels-Alder ribozyme
Coloring options: