IL_1YLS_012

3D structure

PDB id

1YLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCCGG*CAAUACUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YLS_012 not in the Motif Atlas

Geometric match to IL_1YLS_011

Geometric discrepancy: 0.0718

The information below is about IL_1YLS_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49867.1

Basepair signature

cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

Number of instances in this motif group

1

Unit IDs

1YLS|1|D|G|211
1YLS|1|D|U|212
1YLS|1|D|G|213
1YLS|1|D|C|214
1YLS|1|D|C|215
1YLS|1|D|G|216
1YLS|1|D|G|217
*
1YLS|1|D|C|228
1YLS|1|D|A|229
1YLS|1|D|A|230
1YLS|1|D|U|231
1YLS|1|D|A|232
1YLS|1|D|C|233
1YLS|1|D|U|234
1YLS|1|D|C|235

Current chains

Chain D

RNA Diels-Alder ribozyme

Nearby chains

Chain B

RNA Diels-Alder ribozyme

Chain C

RNA Diels-Alder ribozyme