IL_1Z43_002

3D structure

PDB id

1Z43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 7S.S SRP RNA of M. jannaschii

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAACCC*GUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z43_002 not in the Motif Atlas

Geometric match to IL_7A0S_053

Geometric discrepancy: 0.2452

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1Z43|1|A|C|192
1Z43|1|A|G|193
1Z43|1|A|A|194
1Z43|1|A|A|195
1Z43|1|A|C|196
1Z43|1|A|C|197
1Z43|1|A|C|198
*
1Z43|1|A|G|223
1Z43|1|A|U|224
1Z43|1|A|A|225
1Z43|1|A|G|226

Current chains

Chain A

RNA (101-MER)

Nearby chains