IL_1Z58_002

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AGA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGA,UCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_002 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1697

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

1Z58|1|2|A|6
1Z58|1|2|G|7
1Z58|1|2|A|8
*
1Z58|1|2|U|2869
1Z58|1|2|C|2870
1Z58|1|2|U|2871

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains